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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs56700945 chr5:120114343 T/A GABRA6 chr5:160974069-161129599:+ 0.41 5.9 7.04E-9 Box Plot
THCA rs56769703 chr7:140140603 C/T LOC441455 chr9:99488103-99489749:+ 0.49 6.49 2.18E-10 Box Plot
THCA rs56778427 chr5:49756698 G/A LOC647121 chr1:121260910-121313686:+ 0.38 8.16 3.05E-15 Box Plot
THCA rs56796698 chr14:66793388 CCCAA/C ATP6V1D chr14:67761088-67826982:- 0.42 7.24 1.77E-12 Box Plot
THCA rs56839031 chr7:66309060 TC/T CCT6P1 chr7:65216129-65228341:+ 0.44 6.76 3.94E-11 Box Plot
THCA rs56840575 chr2:90242155 C/T ZNF514 chr2:95813075-95831158:- -0.36 -6.61 1.0E-10 Box Plot
THCA rs56856699 chr6:26843647 G/GTAAA ZFP57 chr6:29640169-29648887:- 0.75 7.51 2.94E-13 Box Plot
THCA rs56862318 chr6:27185354 G/A ZFP57 chr6:29640169-29648887:- 0.6 6.4 3.79E-10 Box Plot
THCA rs56874662 chr6:26985607 C/A ZFP57 chr6:29640169-29648887:- 0.53 5.96 4.87E-9 Box Plot
THCA rs56890545 chr2:101157600 C/T LOC285359 chr3:101431278-101432259:+ 0.36 6.01 3.72E-9 Box Plot
THCA rs56896853 chr8:28910315 C/T LOC644936 chr5:79594919-79596297:- -0.69 -5.9 6.85E-9 Box Plot
THCA rs56908101 chr5:170826324 T/C CLEC2D chr12:9817565-9852151:+ -0.19 -6.13 1.88E-9 Box Plot
THCA rs56908114 chr5:45416794 T/C LOC647121 chr1:121260910-121313686:+ 0.35 7.44 4.57E-13 Box Plot
THCA rs56937549 chr5:49569364 TG/T LOC647121 chr1:121260910-121313686:+ -0.36 -7.8 3.98E-14 Box Plot
THCA rs56941202 chr3:125785871 CTGTGTCAATG/C ROPN1 chr3:123687368-123711025:- 0.33 6.05 2.89E-9 Box Plot